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Gene Ontology Database software
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Gene Ontology Database

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Released: December 19, 2012  |  Added: December 19, 2012 | Visits: 327

Gene Ontology The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.



Platforms: Windows, Mac, Linux

License: Freeware Size: 44.5 MB Download (29): Gene Ontology Download

Added: August 24, 2013 | Visits: 192

TranscriptomeBrowser Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...).





Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 838 B Download (16): TranscriptomeBrowser Download

Released: June 24, 2012  |  Added: June 24, 2012 | Visits: 206

BioAGENDA AGENDA (Application for mining Gene Ontology Data)


Platforms: Windows, Mac, Linux

License: Freeware Size: 59.32 KB Download (27): BioAGENDA Download

Released: August 19, 2012  |  Added: August 19, 2012 | Visits: 190

mged Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)


Platforms: Windows, Mac, Linux

License: Freeware Size: 761.86 KB Download (27): mged Download

Added: June 15, 2013 | Visits: 165

GO-Elite GO-Elite is a software tool designed to identify a minimal non-redundant set of Gene Ontology (GO) biological terms and pathways to describe a particular set of input identifiers. This tool calculates over-representation statistics similiar to the program MAPPFinder and subsequently produces...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 15.17 MB Download (18): GO-Elite Download

Added: July 03, 2013 | Visits: 289

SBML Reaction Finder Easily find and extract specific chemical reactions from the BioModels database. Features - Autosuggest for Gene Ontology terms - Update feature ensures access to the latest version of BioModels repository


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 11.18 MB Download (31): SBML Reaction Finder Download

Added: July 09, 2013 | Visits: 201

ErmineJ ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...


Platforms: Mac

License: Freeware Size: 21.13 MB Download (16): ErmineJ Download

Released: March 27, 2014  |  Added: March 27, 2014 | Visits: 132

EcoCyc EcoCyc is an electronic reference source for E. coli biologists and biologists who work with related microorganisms. EcoCyc Mobile provides a streamlined mobile interaction for EcoCyc, a bioinformatics database that describes the genome and the biochemical machinery of Escherichia coli K-12...


Platforms: iOS

License: Freeware Size: 2.4 MB Download (7): EcoCyc Download

Added: April 23, 2010 | Visits: 699

GO::View GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford...


Platforms: *nix

License: Freeware Size: 870.4 KB Download (105): GO::View Download

Released: July 19, 2012  |  Added: July 19, 2012 | Visits: 247

FastSemSim FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures. The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology


Platforms: Windows

License: Freeware Download (38): FastSemSim Download

Released: October 19, 2012  |  Added: October 19, 2012 | Visits: 220

MEFIT MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration. Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions....


Platforms: Windows

License: Freeware Download (49): MEFIT Download

Released: October 12, 2012  |  Added: October 12, 2012 | Visits: 255

Osprey Network Visualization System Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.


Platforms: Windows, Mac, Solaris, Linux

License: Freeware Size: 8.32 MB Download (31): Osprey Network Visualization System Download

Added: September 12, 2013 | Visits: 185

Blast2GO Blast2GO?*A* is an ALL in ONE tool for functional annotation of (novel) sequences and the analysis of annotation data. Main Application Features are: Easy start up and low maintenance. Make sure you have JAVA, download Blast2GO from this site and start using the application. Updates are...


Platforms: Mac

License: Freeware Size: 4.1 KB Download (19): Blast2GO Download

Added: June 22, 2013 | Visits: 224

Global Synonyms Translator The Synonym and Global Translator is a Gaggle Enabled Java program that enables a user to translate between different gene identifiers and find orthologous genes for a number of different species through the use of the BioNetBuilder database server. It is free to use, but is no longer actively...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 10.24 KB Download (16): Global Synonyms Translator Download

Released: February 20, 2012  |  Added: March 10, 2012 | Visits: 4.532

Database Tour Pro Database Tour Pro is a cross-database tool. It works via ADO or BDE and was tested on Paradox, dBase, FoxPro, ASCII, CSV, Interbase, Firebird, Lotus, HTML, Oracle, SQL Server, MS Access, MS Excel, PostgreSQL, MySQL. Key features: -Accessing different types of databases. -Creating...


Platforms: Windows

License: Shareware Cost: $97.00 USD Size: 2.55 MB Download (807): Database Tour Pro Download

Released: September 09, 2001  |  Added: June 15, 2006 | Visits: 3.787

db4o - database for objects db4o - database for objects - is a fast Java object database. A footprint of 80 kB saves device memory and allows online-download. Query-By-Example minimizes resource consumption and improves performance. Automatic object recognition permits zero-admin deployment. Integration with the Java...



License: Freeware Download (268): db4o - database for objects Download

Released: October 10, 2001  |  Added: January 07, 2006 | Visits: 2.824

Memory Database System Demo This demo shows you the performance of the memory database system of the database engine developed by MemDB.



License: Freeware Size: 400 KB Download (116): Memory Database System Demo Download

Released: February 09, 2002  |  Added: July 04, 2006 | Visits: 2.844

Database Genius Database Genius is a database tool used to create and execute SQL statements in a easy to use graphical environment. After executing a query, the user can format the results to create a report and export it to html, excel, dbf, text, csv, windows meta file, and other file formats....


Platforms: Windows

License: Shareware Cost: $90.00 USD Size: 6.01 MB Download (157): Database Genius Download

Added: October 07, 2006 | Visits: 2.661

Brilliant Database We live during the Age of Information. And everyday we get more and more of it. In order to manage it effectively, to separate necessary information from unnecessary and to classify information properly, people created databases. But the problem with the average database is that it is complicated...


Platforms: Windows

License: Shareware Cost: $34.00 USD Size: 2.75 MB Download (163): Brilliant Database Download

Added: July 02, 2006 | Visits: 3.543

Database Web Explorer Database Web Explorer is an universal Web-based database manager intended to work with DBMS in Internet/Intranet networks. Database Web Explorer allows you to manipulate the data stored in databases via Internet. As programm of the remote access the usual Web-browser is used. Database Web...


Platforms: BeOS, Windows, Mac

License: Shareware Cost: $39.00 USD Size: 59 KB Download (236): Database Web Explorer Download

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