Gene Ontology Database
The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 44.5 MB||Download (29): Gene Ontology Download|
Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...).
|License: Shareware||Cost: $0.00 USD||Size: 838 B||Download (16): TranscriptomeBrowser Download|
AGENDA (Application for mining Gene Ontology Data)
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 59.32 KB||Download (27): BioAGENDA Download|
Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 761.86 KB||Download (27): mged Download|
GO-Elite is a software tool designed to identify a minimal non-redundant set of Gene Ontology (GO) biological terms and pathways to describe a particular set of input identifiers. This tool calculates over-representation statistics similiar to the program MAPPFinder and subsequently produces...
|License: Shareware||Cost: $0.00 USD||Size: 15.17 MB||Download (18): GO-Elite Download|
Easily find and extract specific chemical reactions from the BioModels database. Features - Autosuggest for Gene Ontology terms - Update feature ensures access to the latest version of BioModels repository
|License: Shareware||Cost: $0.00 USD||Size: 11.18 MB||Download (31): SBML Reaction Finder Download|
ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...
|License: Freeware||Size: 21.13 MB||Download (16): ErmineJ Download|
EcoCyc is an electronic reference source for E. coli biologists and biologists who work with related microorganisms. EcoCyc Mobile provides a streamlined mobile interaction for EcoCyc, a bioinformatics database that describes the genome and the biochemical machinery of Escherichia coli K-12...
|License: Freeware||Size: 2.4 MB||Download (7): EcoCyc Download|
GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford...
|License: Freeware||Size: 870.4 KB||Download (105): GO::View Download|
FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures.
The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology
|License: Freeware||Download (38): FastSemSim Download|
MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration.
Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions....
|License: Freeware||Download (49): MEFIT Download|
Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.
Platforms: Windows, Mac, Solaris, Linux
|License: Freeware||Size: 8.32 MB||Download (31): Osprey Network Visualization System Download|
Blast2GO?*A* is an ALL in ONE tool for functional annotation of (novel) sequences and the analysis of annotation data. Main Application Features are: Easy start up and low maintenance. Make sure you have JAVA, download Blast2GO from this site and start using the application. Updates are...
|License: Freeware||Size: 4.1 KB||Download (19): Blast2GO Download|
The Synonym and Global Translator is a Gaggle Enabled Java program that enables a user to translate between different gene identifiers and find orthologous genes for a number of different species through the use of the BioNetBuilder database server. It is free to use, but is no longer actively...
|License: Shareware||Cost: $0.00 USD||Size: 10.24 KB||Download (16): Global Synonyms Translator Download|
Database Tour Pro is a cross-database tool. It works via ADO or BDE and was tested on Paradox, dBase, FoxPro, ASCII, CSV, Interbase, Firebird, Lotus, HTML, Oracle, SQL Server, MS Access, MS Excel, PostgreSQL, MySQL.
-Accessing different types of databases.
|License: Shareware||Cost: $97.00 USD||Size: 2.55 MB||Download (807): Database Tour Pro Download|
db4o - database for objects - is a fast Java object database. A footprint of 80 kB saves device memory and allows online-download. Query-By-Example minimizes resource consumption and improves performance. Automatic object recognition permits zero-admin deployment. Integration with the Java...
|License: Freeware||Download (268): db4o - database for objects Download|
This demo shows you the performance of the memory database system of the database engine developed by MemDB.
|License: Freeware||Size: 400 KB||Download (116): Memory Database System Demo Download|
Database Genius is a database tool used to
create and execute SQL statements in a easy to use graphical environment.
After executing a query, the user can format the results to create a
report and export it to html, excel, dbf, text, csv, windows meta file,
and other file formats....
|License: Shareware||Cost: $90.00 USD||Size: 6.01 MB||Download (157): Database Genius Download|
We live during the Age of Information. And everyday we get more and more of it. In order to manage it effectively, to separate necessary information from unnecessary and to classify information properly, people created databases. But the problem with the average database is that it is complicated...
|License: Shareware||Cost: $34.00 USD||Size: 2.75 MB||Download (163): Brilliant Database Download|
Database Web Explorer is an universal Web-based database manager intended to work with DBMS in Internet/Intranet networks. Database Web Explorer allows you to manipulate the data stored in databases via Internet. As programm of the remote access the usual Web-browser is used. Database Web...
Platforms: BeOS, Windows, Mac
|License: Shareware||Cost: $39.00 USD||Size: 59 KB||Download (236): Database Web Explorer Download|